University of Southern California Center for Neural Engineering The USC Andrew and Erna Viterbi School of Engineering USC

Books / Book Chapters


T. W. Berger, J. K. Chapin, G. A. Gerhardt, D. J. McFarland, J. C. Principe, W. V. Soussou, D. M. Taylor, and P. A. Tresco, Brain-computer interfaces: An international assessment of research and development trends. New York: Springer Dordrecht, 2008.
J.-M. Bouteiller, M. Baudry, and T. W. Berger, "EONS an Online Synaptic Modeling Platform," in Encyclopedia of healthcare information systems, N. Wickramasinghe and E. Geisler, Eds. Hershey, PA: Medical Information Science Reference, 2008.
M. L. Stephens, D. D. Spencer, I. Cavus, M.-C. Hsiao, D. Song, S. A. Deadwyler, R. E. Hampson, D. Putz, J. E. Quintero, M. K. Bensalem-Owen, K. N. Hascup, R. E.C., B. K. Day, J. R. Nickell, F. Pomerleau, P. Huettl, J. J. Burmeister, P. M. Talauliker, V. Z. Marmarelis, J. J. Granacki, T. W. Berger, and G. A. Gerhardt, "Microelectrode-based epilepsy therapy: A hybrid neural prosthesis incorporating seizure prediction and intervention with biomimetic maintenance of normal hippocampal function," in Computational neuroscience in epilepsy, 1st ed, I. Soltesz and K. Staley, Eds. Amsterdam ; Boston: Elsevier/Academic Press, 2008.
T. W. Berger and D. Glanzman, Toward replacement parts for the brain : implantable biomimetic electronics as neural prostheses. Cambridge, Mass.: MIT Press, 2005.
M. Baudry, J.-M. Bouteiller, J. S. Liaw, and T. W. Berger, "NMDA Receptors: Synaptic, Cellular and Network Models," in The handbook of brain theory and neural networks, 2nd ed, M. A. Arbib, Ed. Cambridge, Mass.: MIT Press, 2003.


Journal Publications
 

2009
D. Song, R. H. M. Chan, V. Z. Marmarelis, R. E. Hampson, S. A. Deadwyler, and T. W. Berger, "Nonlinear modeling of neural population dynamics for hippocampal prosthesis", Neural Networks, vol. 22, pp. 1340-1351, 2009.
D. Song, V. Z. Marmarelis, and T. W. Berger, "Parametric and non-parametric modeling of short-term synaptic plasticity. Part I: computational study,"Journal of Computational Neuroscience, vol. 26, pp. 1-19, 2009.
D. Song, Z. Wang, V. Z. Marmarelis, and T. W. Berger, "Parametric and non-parametric modeling of short-term synaptic plasticity. Part II: Experimental study," Journal of Computational Neuroscience, vol. 26, pp. 21-37, 2009.










2008
A. Dimoka, S. H. Courellis, V. Z. Marmarelis, and T. W. Berger, "Modeling the nonlinear dynamic interactions of afferent pathways in the dentate gyrus of the hippocampus," Annals of Biomedical Engineering, vol. 36, pp. 852-864, 2008.
A. Dimoka, S. H. Courellis, G. I. Gholmieh, V. Z. Marmarelis, and T. W. Berger, "Modeling the nonlinear properties of the in vitro hippocampal perforant path-dentate system using multielectrode array technology," IEEE Transactions on Biomedical Engineering, vol. 55, pp. 693-702, 2008.
 
2007

J-M. C. Bouteiller, M. Baudry, S. L. Allam, R. J. Greget, S. Bischoff, and T. W. Berger, "Modeling Glutamatergic Synapses: Insights into Mechanisms Regulating Synaptic Efficacy", Journal of Integrative Neuroscience, vol. 7, no. 2, pp. 185-97, 2007.

D. Song, R. H. M. Chan, V. Z. Marmarelis, R. E. Hampson, S. A. Deadwyler, and T. W. Berger, “Nonlinear dynamic modeling of spike train transformations for hippocampal-cortical prostheses”, IEEE Transactions on Biomedical Engineering, vol. 54, no. 6, Part 1, pp. 1053-1066, 2007.
W. V. Soussou, G. J. Yoon, R. D. Brinton, and T. W. Berger, "Neuronal network morphology and electrophysiology of hippocampal neurons cultured on surface-treated multielectrode arrays," IEEE Transactions on Biomedical Engineering, vol. 54, pp. 1309-1320, 2007.

2006
S. Y. Lu, A. Bansal, W. Soussou, T. W. Berger, and A. Madhukar, "Receptor-ligand-based specific cell adhesion on solid surfaces: Hippocampal neuronal cells on bilinker functionalized glass," Nano Letters, vol. 6, pp. 1977-1981, 2006.
M. T. Kim, W. Soussou, G. Gholmieh, A. Ahuja, A. Tanguay, T. W. Berger, and R. D. Brinton, "17 beta-estradiol potentiates field excitatory postsynaptic potentials within each subfield of the hippocampus with greatest potentiation of the associational/commissural afferents of CA3," Neuroscience, vol. 141, pp. 391-406, 2006.
G. Gholmieh, W. Soussou, M. Han, A. Ahuja, M. C. Hsiao, D. Song, A. R. Tanguay, and T. W. Berger, "Custom-designed high-density conformal planar multielectrode arrays for brain slice electrophysiology," Journal of Neuroscience Methods, vol. 152, pp. 116-129, 2006.

2005
T. W. Berger, A. Ahuja, S. H. Courellis, S. A. Deadwyler, G. Erinjippurath, G. A. Gerhardt, G. Gholmieh, J. J. Granacki, R. Hampson, M. C. Hsaio, J. Lacoss, V. Z. Marmarelis, P. Nasiatka, V. Srinivasan, D. Song, A. R. Tanguay, and J. Wills, "Restoring lost cognitive function," IEEE Engineering in Medicine and Biology Magazine, vol. 24, pp. 30-44, Sep-Oct 2005.
V. Z. Marmarelis and T. W. Berger, "General methodology for nonlinear modeling of neural systems with Poisson point-process inputs," Mathematical Biosciences, vol. 196, pp. 1-13, Jul 2005.

2004
G. Gholmieh, S. Courellis, A. Dimoka, J. D. Wills, J. LaCoss, J. J. Granacki, V. Marmarelis, and T. Berger, "An algorithm for real-time extraction of population EPSP and population spike amplitudes from hippocampal field potential recordings," Journal of Neuroscience Methods, vol. 136, pp. 111-121, 2004.

Selected Conference Publications


2009
H. O. Park, A. A. Dibazar, and T. W. Berger, "Cadence Analysis of Temporal Gait Patterns for Seismic Discrimination between Human and Quadruped Footsteps," in IEEE International Conference on Acoustics, Speech, and Signal Processing, 2009, pp. 1749-1752.
R. H. M. Chan, D. Song, and T. W. Berger, "Nonstationary Nonlinear Dynamic Modeling of Hippocampus", in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2009, pp. 4559-4562.
U. Lu, D. Song, and T. W. Berger, "Nonlinear model of single hippocampal neurons with dynamical thresholds", in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2009, pp.3330-3334.

2008
D. Song, P. Hendrickson, V. Z. Marmarelis, J. Aguayo, J. P. He, G. E. Loeb, and T. W. Berger, "Predicting EMG with Generalized Volterra Kernel Model," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2008, pp. 201-204.
U. Lu, D. Song, and T. W. Berger, "Nonparametric Modeling of Single Neuron," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2008, pp. 2469-2472.
M. C. Hsiao, D. Song, and T. W. Berger, "Control Theory-Based Regulation of Hippocampal CA1 Nonlinear Dynamics," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2008, pp. 5535-5538.
R. H. M. Chan, D. Song, and T. W. Berger, "Tracking Temporal Evolution of Nonlinear Dynamics in Hippocampus using Time-Varying Volterra Kernels," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2008, pp. 4996-4999.
A. A. Dibazar, A. Yousefi, and T. W. Berger, "A System for Move-Free and Real Time Monitoring of Readiness," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2008, pp. 4879-4882.
H. O. Park, A. A. Dibazar, and T. W. Berger, "Protecting military perimeters from approaching human and vehicle using biologically realistic Dynamic Synapse Neural Network," in IEEE Conference on Technologies for Homeland Security, 2008, pp. 73-78.
B. Lu, A. Dibazar, and T. W. Berger, "Perimeter security on detecting acoustic signature of approaching vehicle using nonlinear neural computation," in IEEE Conference on Technologies for Homeland Security, 2008, pp. 51-56.
B. Lu, A. Dibazar, and T. W. Berger, "Nonlinear Hebbian Learning for Noise-Independent Vehicle Sound Recognition," in IEEE International Joint Conference on Neural Networks, 2008, pp. 1336-1343.
S. L. Allam, J. M. C. Bouteiller, R. Greger, S. Bischoff, M. Baudry, and T. W. Berger, "EONS Synaptic Modeling Platform: Exploration of Mechanisms Regulating Information Processing in the CNS and Application to Drug Discovery," in Frontiers in Biomedical Devices Conference, 2008, pp. 117-118.

2007
D. Song, R. H. M. Chan, V. Z. Marmarelis, R. E. Hampson, S. A. Deadwyler, and T. W. Berger, "Statistical selection of multiple-input multiple-output nonlinear dynamic models of spike train transformation," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2007, pp. 4727-4730.
B. Lu, W. M. Yamada, and T. W. Berger, "Asymmetric synaptic plasticity based on arbitrary pre- and postsynaptic timing spikes using finite state model," in IEEE International Joint Conference on Neural Networks, 2007, pp. 841-846.
A. A. Dibazar, H. O. Park, and T. W. Berger, "The application of dynamic synapse neural networks on footstep and vehicle recognition," in IEEE International Joint Conference on Neural Networks, 2007, pp. 1842-1846.

2006
X. P. Xie, D. Song, Z. Wang, V. Z. Marmarelis, and T. W. Berger, "Interaction of short-term neuronal plasticity and synaptic plasticity revealed by nonlinear systems analysis in dentate granule cells," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2006, pp. 3086-3089.
D. Song, R. H. M. Chan, V. Z. Marmarelis, R. E. Hampson, S. A. Deadwyler, and T. W. Berger, "Physiologically plausible stochastic nonlinear kernel models of spike train to spike train transformation," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2006, pp. 2970-2973.
M. C. Hsiao, C. H. Chan, V. Srinivasan, A. Abuja, G. Erinjippurath, T. P. Zanos, G. Gholmieh, D. Song, J. D. Wills, J. LaCoss, S. Courellis, A. R. Tanguay, J. J. Granacki, V. Z. Marmarelis, and T. W. Berger, "VLSI implementation of a nonlinear neuronal model: A "neural prosthesis" to restore hippocampal trisynaptic dynamics," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2006, pp. 2463-2466.
A. Dimoka, S. H. Courellis, V. Z. Marmarelis, and T. W. Berger, "Modeling the nonlinear dynamic interactions of the lateral and the medial perforant path of the hippocampal dentate gyrus," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2006, pp. 2851-2854.
J. M. C. Bouteiller, Y. Qiu, M. B. Ziane, M. Baudry, and T. W. Berger, "EONS: An online synaptic modeling platform," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2006, pp. 2867-2870.
A. A. Dibazar, T. W. Berger, and S. S. Narayanan, "Pathological voice assessment," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2006, pp. 3144-3148.
B. Lu, W. M. Yamada, and T. W. Berger, "Nonlinear dynamic neural network for text-independent speaker mentification using ffnformation theoretic learning technology," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2006, pp. 5814-5817.
B. Lu, W. M. Yamada, and T. W. Berger, "Nonlinear queuing model for dynamic synapse with multiple transmitter pools," in IEEE International Joint Conference on Neural Network Proceedings, 2006, pp. 181-187.
A. A. Dibazar, A. Bangalore, H. O. Park, S. George, W. Yamada, and T. W. Berger, "Hardware implementation of dynamic synapse neural networks for acoustic sound recognition," in IEEE International Joint Conference on Neural Network Proceedings, 2006, pp. 2015-2022.
 
2005
T. W. Berger, J. J. Granacki, V. Z. Marmarelis, A. R. Tanguay, S. A. Deadwyler, and G. A. Gerhardt, "Implantable biomimetic electronics as neural prostheses for lost cognitive function," in Proceedings of the International Joint Conference on Neural Networks (IJCNN), 2005, pp. 3109-3114.
 
2004
D. Song, Z. Wang, V. Z. Marmarelis, and T. W. Berger, "A modeling paradigm incorporating parametric and non-parametric methods," in Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2004, pp. 647-650.
A. A. Dibazar, D. Song, W. Yamada, and T. W. Berger, "Speech recognition based on fundamental functional principles of the brain," in IEEE International Joint Conference on Neural Networks, 2004, pp. 3071-3075.

 

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